Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0807605.1b with 4 members (glucuronokinase with putative uridyl pyrophosphorylase)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala / Euteleosteomorpha / Acanthomorphata / Percomorphaceae /

Carangaria /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

68.1%

This HOG has 1891 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0992147	Bacteria	2728		97.7%	2
HOG:E0990810	Bacteria	1691		80.5%	2
HOG:E1027327	LUCA	1101		97.6%	2
HOG:E0802960	Eukaryota	680		94.0%	2
HOG:E1027849	LUCA	461		98.0%	2
HOG:E0017644	Archaea	193		97.4%	2
HOG:E0319336	Streptophyta	150		64.7%	2
HOG:E0805122	Eukaryota	124		98.4%	2
HOG:E0322407	Viridiplantae	93		96.8%	2
HOG:E0396220	Basidiomycota	53		94.3%	2
HOG:E0904637	g__Corynebacterium	43		81.4%	2
HOG:E0017788	Archaea	20		100.0%	2
HOG:E0855373	p__Planctomycetota	19		63.2%	2
HOG:E0424299	Dothideomycetes	18		100.0%	2
HOG:E0139770	Plasmodium	16		93.8%	2
HOG:E1033620	LUCA	13		92.3%	2
HOG:E1033596	LUCA	12		50.0%	2
HOG:E1036132	LUCA	11		90.9%	2
HOG:E1013090	Bacteria	10		60.0%	2
HOG:E0763921	Bilateria	7		100.0%	2
HOG:E0833026	Eukaryota	7		100.0%	2
HOG:E0135438	Piroplasmida	6		100.0%	2
HOG:E0990647	Bacteria	6		100.0%	2
HOG:E0133449	Conoidasida	5		100.0%	2
HOG:E0234726	Gossypium	4		100.0%	2

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